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Is QuickBooks Payroll Not Calculating Taxes? Let’s Fix That

When creating paychecks, you might find QuickBooks payroll not calculating taxes or not doing so correctly. This immediately prompts you to halt your payroll operations. Afterall, calculating and withholding payroll taxes from employees paychecks and submitting them to SSA is one of the crucial things that you can’t overlook. 

Here are some type of issues QuickBooks you might face when creating paychecks:

  • The calculated sum of payroll taxes is invalid.
  • Different tax components are absent on the employee’s paycheck.
  • The total federal or state income tax withheld from the employee’s paycheck is $0.00.

The silver lining is that you can troubleshoot this problem through simple methods. Let us explore what factors give way to this complication and the methods we can utilize to resolve it effectively.

If you need prompt assistance when QuickBooks is not calculating payroll taxes, you can dial 1(800) 780-3064 to connect with an experienced QB professional.

Reasons Why QuickBooks Payroll Not Calculating Taxes

Here are some common reasons why might QuickBooks have stopped calculating payroll taxes.

  • Outdated QuickBooks Desktop payroll and tax table.
  • The employee’s total earnings have exceeded the wage base limit for the specific tax.
  • Invalid setup of payroll items, tax, or employee in QuickBooks Desktop.
  • The gross wages of the employee are too low to calculate tax.

Now that you know various reasons behind QuickBooks not calculating payroll taxes, let’s dive deep into and explore relevant troubleshooting methods.

6 Proven Tips to Fix When QuickBooks Not Calculating Taxes

Here are the experts recommended solutions to run when you find QuickBooks not calculating payroll taxes. However, remember to carry them out in the order they are given.

1. Install QuickBooks Desktop Updates

The first thing to do is download and install the latest updates for QuickBooks. The software updates come with better performance, bug fixes and new features. This might often resolve common issues in QuickBooks.

2. Get QB Tax Table Updates When QuickBooks Payroll Not Calculating Taxes

Next, get tax table updates for your QuickBooks payroll. This is important before running payroll operations.

Payroll updates come with revised tax rates and performance enhancement. However, if you find QuickBooks payroll update not working, you will need to fix that first.

Once you have updated your QuickBooks Desktop and payroll, check if QB is calculating payroll taxes now.

3. Refresh Your Employee’s Payroll Information

Outdated tax rates, salary status, and deductions affect how tax is calculated in your QB Desktop payroll. Therefore, you should promptly refresh your employee’s payroll information as follows:

(a) When You Are Still Generating the Paycheck

You should revert the employee’s paycheck if you are still generating it. Once you have done that, all the payroll data will be refreshed, and taxes will be calculated precisely. Here are the steps that explain how you can revert the paycheck:

  • Open QB Desktop and promptly choose the Employees menu.
  • Select the Pay Employees tab, after which you must tap Scheduled Payroll.
Resume schedule Payroll
  • Now, choose Resume Scheduled Payroll and immediately right-click the name of the relevant employee.
  • At this point, tap the Revert Paychecks button.
Revert Paycheck to fix QuickBooks payroll not calculating taxes
  • The paycheck will be refreshed with the correct tax details.

(b) When You Have Already Issued the Paycheck

If you have already generated the employee’s paycheck, you need to delete or void it using the following steps:

Case 1: You Haven’t Sent the Paycheck to Intuit

You should delete the paycheck using the following steps if you haven’t sent it to Intuit:

  • Access QuickBooks Desktop and choose the Banking menu.
  • Click Use Register and immediately select your bank account.
  • Tap OK, after which you need to open the relevant employee’s paycheck.
Open the relevant employee’s paycheck
  • Click the Delete button on the paycheck window.
Delete Check
  • Finally, tap OK to confirm the deletion of the paycheck. After that, you can successfully generate a fresh paycheck with correct tax data. 
Case 2: You Have Sent the Paycheck to Intuit

Here are the steps to void the paycheck that you have sent to Intuit:

  • Open QB Desktop, after which you need to select Employees.
  • Now, choose the Edit/Void Paychecks tab on the window.
Edit/Void Paychecks
  • At this point, click the Show paychecks through/from option so that you can choose the relevant dates for your paycheck.
  • Hit Tab on your keyboard, and after that, you should select the relevant paycheck icon. 
  • Tap Void and type YES, after which you should choose Void.
  • Mark the appropriate checkbox to accept all the terms and conditions.
  • Finally, tap OK to void the selected paycheck. After that, you can start creating a fresh paycheck with all the relevant tax details. 

Is QuickBooks payroll not calculating taxes even now? If you find that’s the case, try the next solution.

4. Review the Employee’s Tax Withholding Status

Your employee’s federal or state taxes can appear as $0.00 on the paycheck if your employee claims exemption. Furthermore, taxes can appear as $0.00 if the employee doesn’t receive enough salary to meet the minimum threshold.

We need to check that if you find QuickBooks payroll not calculating taxes. To know the minimum threshold for tax withholding, you can explore the official IRS publication and check out your state tax department website. 

When you notice that the employee should not receive tax exemption, you can change the tax filing status as follows:

  • Open QB Desktop and choose Employees, after which you should click Employee Center.
  • Choose the employee’s name and go to the Payroll Info tab.
  • Now, choose Taxes, after which you need to select the Federal tab.
  • At this point, use the W-4 form menu to select the appropriate form.
  • Select the Filing Status tab, after which you will need to choose the Not Exempt option.
  • Move to the State tab and select the Filing Status tab.
  • Choose Not Exempt, after which you should tap OK.
  • Finally, you can create the employee’s paycheck with proper tax details. 

If QuickBooks fails to calculate payroll taxes, let’s go to the following section to review the employee’s payroll setup.

5. Check the Employee’s Payroll Tax Setup

Taxes are calculated based on the payroll data that you enter in QB Desktop. Here are some key factors that influence the calculation of payroll taxes:

  • Taxable Salary.
  • Number of allowances and dependents.
  • Pay frequency.
  • Filing status setup. 

You need to review all these factors in the employee’s payroll tax setup. Here’s how to do so:

  • Swiftly open QB Desktop and choose the Employees menu.
  • Go to the Employee Center and double-click the name of the relevant employee.
  • At this point, choose Payroll Info and verify the Pay Frequency.
  • Select the Taxes option, after which you will need to choose the Federal tab.
  • Verify the Filing Status and Allowances. If required, make necessary corrections in the relevant fields.
  • Tap OK to save the verified payroll tax setup of the employee.
  • Finally, recreate the employee’s paycheck with the correct tax details.

If you find QuickBooks not calculating payroll taxes even after verifying the employee’s payroll tax setup, let us repair the QB company file as described below.

6. Operate the Verify and Rebuild Data Utility

QB Desktop maintains a comprehensive record of payroll tax data in the company file. This data is highly crucial for payroll tax calculation, payroll processing, and compliance. If this data is corrupted, you won’t be able to ensure proper tax calculation for your employees.

The Verify and Rebuild Data utility can effectively repair the company file that stores payroll tax data. Therefore, verify and rebuild your company file if you find QuickBooks payroll not calculating taxes. Now, check if you can recreate the employee’s paycheck with precise tax details.

Winding Up

In this elaborate guide, we have explored various solutions for the event of QuickBooks payroll not calculating taxes. Hopefully, you can now calculate payroll taxes correctly for all your employees. 

If, however, you are still experiencing a challenge doing so, have a query, dial 1(800) 780-3064 to connect with a QB professional. They are available round the clock and will help you resolve QuickBooks issues in no time!

Top Queries on QB Payroll Taxes

Why is QuickBooks payroll not deducting federal taxes?

QuickBooks payroll won’t deduct federal taxes if the employee’s pay is too low to meet the required threshold. Additionally, the federal taxes won’t be calculated if the employee has too many dependents.

How do I fix tax calculation errors in QuickBooks payroll?

The simple ways to resolve tax calculation errors are installing new payroll tax table updates, verifying employee’s payroll data, and reviewing employee’s tax setup.

Can QuickBooks payroll not calculating taxes affect QB payroll reports?

Yes, invalid tax calculations can trigger problems in various payroll reports, such as payroll summary reports and payroll tax liability reports.

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